If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ), 'gf_id' => 'HOM05D000881', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000881' ), 'data_identifier' => 'HOM05D000881', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000881', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01910' => 'bna', 'A03p10370' => 'bna', 'A03p15510' => 'bna', 'A03p26740' => 'bna', 'A04p20590' => 'bna', 'A10p19060' => 'bna', 'A10p31250' => 'bna', 'A10p31260' => 'bna', 'Aa31LG11G5820' => 'aar', 'Aa31LG1G13760' => 'aar', 'Aa31LG2G1880' => 'aar', 'Aa31LG5G8550' => 'aar', 'Actinidia03943' => 'ach', 'Actinidia03944' => 'ach', 'Actinidia06353' => 'ach', 'Actinidia19059' => 'ach', 'Actinidia22466' => 'ach', 'Actinidia24915' => 'ach', 'Actinidia32811' => 'ach', 'Actinidia34978' => 'ach', 'Actinidia37794' => 'ach', 'Actinidia37795' => 'ach', 'Ah.02g113200' => 'amhyb', 'Ah.02g115190' => 'amhyb', 'Ah.04g162620' => 'amhyb', 'Ah.08g222530' => 'amhyb', 'Ah.08g222540' => 'amhyb', 'Ah.08g222550' => 'amhyb', 'Ah.12g059710' => 'amhyb', 'AL1G64700' => 'aly', 'AL4G20880' => 'aly', 'AL6G14570' => 'aly', 'AL6G32540' => 'aly', 'Aqoxy1G00549' => 'aox', 'Aqoxy2G00607' => 'aox', 'Aqoxy2G03856' => 'aox', 'Aqoxy3G03278' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1N783C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D7AF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ4RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED5JXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLLM5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HSXH7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYC01E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1HUHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC7BND' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZF4SB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U52HT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U60VHX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXI833' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPFB8W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8A2Y7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVX95B' => 'arhy', 'AT1G54400' => 'ath', 'AT2G27140' => 'ath', 'AT5G04890' => 'ath', 'AT5G20970' => 'ath', 'ATR0697G043' => 'atr', 'Atru.chr12.1161' => 'acertr', 'Atru.chr2.1411' => 'acertr', 'Atru.chr3.3015' => 'acertr', 'Atru.chr9.2311' => 'acertr', 'Atru.chr9.2312' => 'acertr', 'AUR62001592' => 'cqu', 'AUR62001593' => 'cqu', 'AUR62008362' => 'cqu', 'AUR62014290' => 'cqu', 'AUR62020187' => 'cqu', 'AUR62020188' => 'cqu', 'AUR62021735' => 'cqu', 'AUR62034145' => 'cqu', 'AUR62036271' => 'cqu', 'AUR62036272' => 'cqu', 'AUR62036273' => 'cqu', 'AUR62039721' => 'cqu', 'AUR62039722' => 'cqu', 'AUR62039723' => 'cqu', 'AUR62041192' => 'cqu', 'AUR62044159' => 'cqu', 'BcaB01g03051' => 'bca', 'BcaB01g04224' => 'bca', 'BcaB01g05921' => 'bca', 'BcaB05g21742' => 'bca', 'BcaB05g22794' => 'bca', 'BcaB06g28112' => 'bca', 'BcaC01g04924' => 'bca', 'BcaC01g06208' => 'bca', 'BcaC02g08281' => 'bca', 'BcaC02g08282' => 'bca', 'BcaC03g13137' => 'bca', 'BcaC03g13822' => 'bca', 'BcaC04g19495' => 'bca', 'BcaC06g31769' => 'bca', 'BcaC06g32196' => 'bca', 'BcaC06g32197' => 'bca', 'BcaNung05155' => 'bca', 'BcaNung05754' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01230' => 'bna', 'BolC2t07090H' => 'bol', 'BolC3t13661H' => 'bol', 'BolC3t14213H' => 'bol', 'BolC4t27167H' => 'bol', 'BolC9t58372H' => 'bol', 'BolC9t59936H' => 'bol', 'BraA02t04826Z' => 'bra', 'BraA02t05608Z' => 'bra', 'BraA03t09561Z' => 'bra', 'BraA03t10349Z' => 'bra', 'BraA03t10844Z' => 'bra', 'BraA10t43985Z' => 'bra', 'BraA10t45169Z' => 'bra', 'C02p02100' => 'bna', 'C02p10560' => 'bna', 'C03p02280' => 'bna', 'C03p11910' => 'bna', 'C03p18100' => 'bna', 'C03p32040' => 'bna', 'C04p56370' => 'bna', 'C09p55080' => 'bna', 'C09p71870' => 'bna', 'C09p71880' => 'bna', 'CAN.G134.59' => 'can', 'CAN.G1711.7' => 'can', 'CAN.G439.20' => 'can', 'CAN.G794.10' => 'can', 'CAN.G794.11' => 'can', 'CAN.G794.9' => 'can', 'CAN.G959.50' => 'can', 'CANSAT56G0189' => 'cansat', 'CANSAT64G1865' => 'cansat', 'CANSAT78G0213' => 'cansat', 'CANSAT78G1545' => 'cansat', 'CANSAT80G1763' => 'cansat', 'CARHR055530' => 'chi', 'CARHR119520' => 'chi', 'CARHR191870' => 'chi', 'CARHR208380' => 'chi', 'Carub.0002s0956' => 'cru', 'Carub.0004s0767' => 'cru', 'Carub.0006s0381' => 'cru', 'Carub.0006s1929' => 'cru', 'Ca_06136_v3' => 'car', 'Ca_06137_v3' => 'car', 'Cc00_g06220' => 'ccan', 'Cc00_g20150' => 'ccan', 'Cc04_g15480' => 'ccan', 'Cc06_g07270' => 'ccan', 'CDE01G0150' => 'cde', 'CDE04G0961' => 'cde', 'CDE04G2129' => 'cde', 'CDE04G3685' => 'cde', 'CDE05G3520' => 'cde', 'CDE07G1560' => 'cde', 'CDE10G0549' => 'cde', 'CDE10G0818' => 'cde', 'Cfa000829' => 'cfa', 'Cfa017677' => 'cfa', 'Cfa017684' => 'cfa', 'Cfa017687' => 'cfa', 'Cfa018986' => 'cfa', 'Ciclev10016030m.g' => 'ccl', 'Ciclev10016041m.g' => 'ccl', 'Ciclev10018348m.g' => 'ccl', 'Ciclev10021984m.g' => 'ccl', 'Ciclev10022272m.g' => 'ccl', 'Ciclev10022629m.g' => 'ccl', 'CiPaw.09G165100' => 'cil', 'CiPaw.11G038600' => 'cil', 'CiPaw.11G038700' => 'cil', 'CiPaw.11G038800' => 'cil', 'CiPaw.11G038900' => 'cil', 'CiPaw.13G046400' => 'cil', 'CiPaw.13G128700' => 'cil', 'CiPaw.14G037000' => 'cil', 'CiPaw.14G092300' => 'cil', 'CiPaw.16G038300' => 'cil', 'CiPaw.16G038500' => 'cil', 'ClCG03G014410' => 'cla', 'ClCG04G012640' => 'cla', 'COL.COLO4_12983' => 'col', 'COL.COLO4_25322' => 'col', 'COL.COLO4_25323' => 'col', 'COL.COLO4_32968' => 'col', 'COL.COLO4_32969' => 'col', 'COL.COLO4_32970' => 'col', 'Cpa.g.sc103.98' => 'cpa', 'Cpa.g.sc161.5' => 'cpa', 'Cpa.g.sc17.209' => 'cpa', 'Cpa.g.sc51.149' => 'cpa', 'Cpa.g.sc54.45' => 'cpa', 'CsaV3_1G005060' => 'csa', 'CsaV3_1G041730' => 'csa', 'CsaV3_1G041750' => 'csa', 'CsaV3_1G041760' => 'csa', 'CSS0013808' => 'camsi', 'CSS0021436' => 'camsi', 'CSS0028596' => 'camsi', 'CSS0029897' => 'camsi', 'CSS0033822' => 'camsi', 'CSS0037632' => 'camsi', 'CSS0046118' => 'camsi', 'CSS0047115' => 'camsi', 'DCAR_006194' => 'dca', 'DCAR_009079' => 'dca', 'DCAR_009080' => 'dca', 'DCAR_011554' => 'dca', 'DCAR_016535' => 'dca', 'Dinv03863' => 'din', 'Dinv04122' => 'din', 'Dinv05245' => 'din', 'Dinv11927' => 'din', 'Dinv19919' => 'din', 'Dinv25100' => 'din', 'Dinv25102' => 'din', 'Dinv32138' => 'din', 'Duzib052G0145' => 'dzi', 'Duzib068G0091' => 'dzi', 'Duzib068G0675' => 'dzi', 'Duzib106G1189' => 'dzi', 'Duzib106G1235' => 'dzi', 'Duzib106G1449' => 'dzi', 'Duzib128G1479' => 'dzi', 'Duzib132G0066' => 'dzi', 'Duzib150G1681' => 'dzi', 'Duzib168G0272' => 'dzi', 'Duzib177G0536' => 'dzi', 'Duzib177G0879' => 'dzi', 'Duzib205G0669' => 'dzi', 'ECA232G3228' => 'eca', 'ECA236G4220' => 'eca', 'EL10Ac4g08752' => 'bvu', 'EL10Ac5g10947' => 'bvu', 'EL10Ac5g11762' => 'bvu', 'EL10Ac5g11763' => 'bvu', 'EL10Ac7g16246' => 'bvu', 'EL10Ac7g16247' => 'bvu', 'Eucgr.G02656' => 'egr', 'Eucgr.J00308' => 'egr', 'Eucgr.J00611' => 'egr', 'Eucgr.K02451' => 'egr', 'FAN03G2527' => 'fan', 'FAN03G3143' => 'fan', 'FAN04G1140' => 'fan', 'FAN04G1642' => 'fan', 'FAN06G1651' => 'fan', 'FAN06G2536' => 'fan', 'FAN08G1722' => 'fan', 'FAN08G3596' => 'fan', 'FAN11G0751' => 'fan', 'FAN13G1177' => 'fan', 'FAN13G2453' => 'fan', 'FAN16G3407' => 'fan', 'FAN18G0931' => 'fan', 'FAN18G3122' => 'fan', 'FAN21G2269' => 'fan', 'FvH4_3g27040' => 'fve', 'FvH4_5g15440' => 'fve', 'FvH4_5g18340' => 'fve', 'FvH4_7g04830' => 'fve', 'FvH4_7g05240' => 'fve', 'Glyma.02G272500' => 'gma', 'Glyma.02G272600' => 'gma', 'Glyma.04G130100' => 'gma', 'Glyma.05G029500' => 'gma', 'Glyma.06G190600' => 'gma', 'Glyma.06G316200' => 'gma', 'Glyma.08G230000' => 'gma', 'Glyma.09G165300' => 'gma', 'Glyma.10G106800' => 'gma', 'Glyma.14G045200' => 'gma', 'Glyma.14G045300' => 'gma', 'Glyma.14G045400' => 'gma', 'Glyma.15G216700' => 'gma', 'Glyma.16G038600' => 'gma', 'Glyma.17G097400' => 'gma', 'Glyma.19G114200' => 'gma', 'Gohir.A05G076300' => 'ghi', 'Gohir.A08G007500' => 'ghi', 'Gohir.A08G219100' => 'ghi', 'Gohir.A08G219200' => 'ghi', 'Gohir.A08G219300' => 'ghi', 'Gohir.A11G232700' => 'ghi', 'Gohir.A11G232800' => 'ghi', 'Gohir.A12G175310' => 'ghi', 'Gohir.A13G164900' => 'ghi', 'Gohir.D05G079100' => 'ghi', 'Gohir.D08G017600' => 'ghi', 'Gohir.D08G236040' => 'ghi', 'Gohir.D08G236060' => 'ghi', 'Gohir.D08G236100' => 'ghi', 'Gohir.D11G243900' => 'ghi', 'Gohir.D11G244000' => 'ghi', 'Gohir.D12G178320' => 'ghi', 'Gohir.D12G178364' => 'ghi', 'Gohir.D13G167700' => 'ghi', 'Gorai.004G012000' => 'gra', 'Gorai.004G251000' => 'gra', 'Gorai.004G251100' => 'gra', 'Gorai.004G251300' => 'gra', 'Gorai.007G259400' => 'gra', 'Gorai.007G259500' => 'gra', 'Gorai.008G190700' => 'gra', 'Gorai.008G190800' => 'gra', 'Gorai.009G080600' => 'gra', 'Gorai.013G194400' => 'gra', 'GSVIVG01001930001' => 'vvi', 'GSVIVG01008056001' => 'vvi', 'GSVIVG01022437001' => 'vvi', 'GSVIVG01037509001' => 'vvi', 'HanXRQChr01g0026391' => 'han', 'HanXRQChr04g0102121' => 'han', 'HanXRQChr09g0271101' => 'han', 'HanXRQChr11g0326381' => 'han', 'HanXRQChr11g0347921' => 'han', 'HanXRQChr15g0470771' => 'han', 'HanXRQChr16g0503171' => 'han', 'HanXRQChr16g0503201' => 'han', 'HanXRQChr16g0516881' => 'han', 'HanXRQChr17g0559031' => 'han', 'Haze_03451' => 'cav', 'Haze_03455' => 'cav', 'Haze_07375' => 'cav', 'Haze_20462' => 'cav', 'Haze_20469' => 'cav', 'Haze_23630' => 'cav', 'Hma1.2p1_0218F.1_g092400' => 'hma', 'Hma1.2p1_0218F.1_g092410' => 'hma', 'HPP92_006461' => 'vpl', 'HPP92_011475' => 'vpl', 'HPP92_015651' => 'vpl', 'HPP92_019534' => 'vpl', 'HPP92_022920' => 'vpl', 'HPP92_022932' => 'vpl', 'HPP92_028049' => 'vpl', 'HPP92_028050' => 'vpl', 'HPP92_028051' => 'vpl', 'HPP92_028054' => 'vpl', 'Hund06059' => 'sun', 'Hund15056' => 'sun', 'Hund18820' => 'sun', 'Hund20971' => 'sun', 'Lalb_Chr04g0249781' => 'lal', 'Lalb_Chr10g0105781' => 'lal', 'Lalb_Chr10g0105791' => 'lal', 'Lalb_Chr12g0196721' => 'lal', 'Lalb_Chr14g0364621' => 'lal', 'Lalb_Chr14g0370271' => 'lal', 'Lalb_Chr18g0049011' => 'lal', 'Lalb_Chr19g0132461' => 'lal', 'Lj1g0015574' => 'lja', 'Lj2g0006631' => 'lja', 'Lj3g0025354' => 'lja', 'Lj3g0025880' => 'lja', 'Lj4g0004603' => 'lja', 'LjContig00564g0002053' => 'lja', 'LjContig00564g0023641' => 'lja', 'LjContig00564g0024719' => 'lja', 'Lsat_1_v5_gn_1_25141' => 'lsa', 'Lsat_1_v5_gn_1_56241' => 'lsa', 'Lsat_1_v5_gn_1_87140' => 'lsa', 'Lsat_1_v5_gn_4_107421' => 'lsa', 'Lsat_1_v5_gn_4_63061' => 'lsa', 'Lsat_1_v5_gn_7_14200' => 'lsa', 'Manes.04G055300' => 'mes', 'Manes.04G059912' => 'mes', 'Manes.07G083200' => 'mes', 'Manes.08G146200' => 'mes', 'Manes.09G138700' => 'mes', 'Manes.09G138800' => 'mes', 'Manes.10G070600' => 'mes', 'Manes.11G105400' => 'mes', 'Manes.14G075100' => 'mes', 'MBI05_g04123_MAGBIO' => 'mbi', 'MBI11_g07703_MAGBIO' => 'mbi', 'MBI11_g07704_MAGBIO' => 'mbi', 'MBI11_g17410_MAGBIO' => 'mbi', 'MBI11_g17411_MAGBIO' => 'mbi', 'MBI11_g17719_MAGBIO' => 'mbi', 'MBI11_g20063_MAGBIO' => 'mbi', 'MBI11_g45239_MAGBIO' => 'mbi', 'MBI14_g12734_MAGBIO' => 'mbi', 'MD02G1259500' => 'mdo', 'MD03G1162700' => 'mdo', 'MD06G1188500' => 'mdo', 'MD06G1239100' => 'mdo', 'MD07G1061000' => 'mdo', 'MD07G1061100' => 'mdo', 'MD11G1178700' => 'mdo', 'MD12G1007500' => 'mdo', 'MD12G1007600' => 'mdo', 'MD14G1004900' => 'mdo', 'MD14G1005100' => 'mdo', 'MD14G1194900' => 'mdo', 'MD14G1195100' => 'mdo', 'Medtr3g007660' => 'mtr', 'Medtr4g107860' => 'mtr', 'Medtr5g086020' => 'mtr', 'Medtr5g087450' => 'mtr', 'Medtr5g087470' => 'mtr', 'Medtr5g087480' => 'mtr', 'Medtr6g478190' => 'mtr', 'Medtr7g086130' => 'mtr', 'Medtr8g046245' => 'mtr', 'MELO3C001943.2' => 'cme', 'MELO3C015587.2' => 'cme', 'MELO3C015589.2' => 'cme', 'Migut.B01122' => 'egut', 'Migut.D00720' => 'egut', 'Migut.L01864' => 'egut', 'Migut.N01922' => 'egut', 'MSTRG.10426' => 'ama', 'MSTRG.18488' => 'ama', 'MSTRG.21312' => 'ama', 'MSTRG.5926' => 'ama', 'Nitab4.5_0000098g0010' => 'nta', 'Nitab4.5_0000098g0020' => 'nta', 'Nitab4.5_0000123g0010' => 'nta', 'Nitab4.5_0000157g0180' => 'nta', 'Nitab4.5_0000157g0240' => 'nta', 'Nitab4.5_0000157g0350' => 'nta', 'Nitab4.5_0000428g0300' => 'nta', 'Nitab4.5_0000428g0490' => 'nta', 'Nitab4.5_0000488g0090' => 'nta', 'Nitab4.5_0000615g0070' => 'nta', 'Nitab4.5_0000785g0230' => 'nta', 'Nitab4.5_0001504g0170' => 'nta', 'Nitab4.5_0001611g0050' => 'nta', 'Nitab4.5_0002131g0030' => 'nta', 'Nitab4.5_0004014g0050' => 'nta', 'Nitab4.5_0004605g0030' => 'nta', 'Nitab4.5_0005222g0020' => 'nta', 'Nitab4.5_0007747g0030' => 'nta', 'Nitab4.5_0009220g0010' => 'nta', 'Nitab4.5_0009220g0020' => 'nta', 'Nitab4.5_0018311g0010' => 'nta', 'Nn2g14496' => 'nnu', 'Nn2g14497' => 'nnu', 'Nn2g14889' => 'nnu', 'Nn2g15728' => 'nnu', 'Nn3g21696' => 'nnu', 'Nn4g22126' => 'nnu', 'Nn4g23057' => 'nnu', 'Nn5g27450' => 'nnu', 'Nn6g32398' => 'nnu', 'Oeu012471.1' => 'oeu', 'Oeu012472.1' => 'oeu', 'Oeu022198.1' => 'oeu', 'Oeu022199.1' => 'oeu', 'Oeu022224.1' => 'oeu', 'Oeu027039.1' => 'oeu', 'Oeu027605.1' => 'oeu', 'Oeu035466.1' => 'oeu', 'Oeu038472.1' => 'oeu', 'Oeu044647.1' => 'oeu', 'Os03g0157600' => 'osa', 'Os03g0656000' => 'osa', 'Os03g0656100' => 'osa', 'Os05g0592000' => 'osa', 'Os10g0437700' => 'osa', 'Os10g0437900' => 'osa', 'Os12g0624100' => 'osa', 'Peaxi162Scf00003g05370' => 'pax', 'Peaxi162Scf00009g00337' => 'pax', 'Peaxi162Scf00061g00281' => 'pax', 'Peaxi162Scf00217g00619' => 'pax', 'Peaxi162Scf00234g00063' => 'pax', 'Peaxi162Scf00342g00927' => 'pax', 'Peaxi162Scf00342g01319' => 'pax', 'Peaxi162Scf00345g00049' => 'pax', 'Peaxi162Scf00345g00410' => 'pax', 'Peaxi162Scf00345g00517' => 'pax', 'Peaxi162Scf00647g00136' => 'pax', 'Peaxi162Scf01021g00028' => 'pax', 'PGR042G3352' => 'pgr', 'PGR044G0518' => 'pgr', 'PGR119G0695' => 'pgr', 'PGR142G0911' => 'pgr', 'PGR142G2192' => 'pgr', 'PGSC0003DMG400002009' => 'stu', 'PGSC0003DMG400007210' => 'stu', 'PGSC0003DMG400008713' => 'stu', 'PGSC0003DMG400008714' => 'stu', 'PGSC0003DMG400008715' => 'stu', 'PGSC0003DMG400018717' => 'stu', 'PGSC0003DMG400025350' => 'stu', 'PGSC0003DMG400027497' => 'stu', 'PGSC0003DMG400027498' => 'stu', 'Phvul.001G113500' => 'pvu', 'Phvul.003G192400' => 'pvu', 'Phvul.003G276200' => 'pvu', 'Phvul.004G140900' => 'pvu', 'Phvul.005G011300' => 'pvu', 'Phvul.007G250400' => 'pvu', 'Phvul.008G209700' => 'pvu', 'Phvul.008G209800' => 'pvu', 'Phvul.009G189900' => 'pvu', 'Phvul.009G196600' => 'pvu', 'Phvul.011G184300' => 'pvu', 'Potri.004G191000' => 'ptr', 'Potri.004G191101' => 'ptr', 'Potri.004G191200' => 'ptr', 'Potri.008G013800' => 'ptr', 'Potri.009G153000' => 'ptr', 'Potri.009G153100' => 'ptr', 'Potri.009G153200' => 'ptr', 'Potri.010G245500' => 'ptr', 'Potri.012G070100' => 'ptr', 'Potri.013G054700' => 'ptr', 'Potri.013G054800' => 'ptr', 'Potri.013G054900' => 'ptr', 'Potri.015G064800' => 'ptr', 'Potri.019G037700' => 'ptr', 'Prupe.2G065600' => 'ppe', 'Prupe.5G186700' => 'ppe', 'Prupe.5G186800' => 'ppe', 'Prupe.5G242900' => 'ppe', 'Prupe.6G151500' => 'ppe', 'Prupe.7G008300' => 'ppe', 'Prupe.7G008400' => 'ppe', 'Prupe.7G008500' => 'ppe', 'Psat1g121560' => 'psa', 'Psat2g023200' => 'psa', 'Psat2g023240' => 'psa', 'Psat2g023360' => 'psa', 'Psat2g023400' => 'psa', 'Psat2g023440' => 'psa', 'Psat3g087960' => 'psa', 'Psat4g053640' => 'psa', 'Psat4g142320' => 'psa', 'Psat4g142360' => 'psa', 'Psat5g229840' => 'psa', 'PSO017G5801' => 'pso', 'PSO063G0751' => 'pso', 'PSO339G0007' => 'pso', 'PSO339G0791' => 'pso', 'PSO339G2895' => 'pso', 'PSO339G4238' => 'pso', 'PSO384G0102' => 'pso', 'PSO384G0812' => 'pso', 'PSO384G3004' => 'pso', 'PSO384G5096' => 'pso', 'PSO591G0061' => 'pso', 'PSO832G1594' => 'pso', 'QL01p018558' => 'qlo', 'QL04p049792' => 'qlo', 'QL04p049805' => 'qlo', 'QL10p015652' => 'qlo', 'QL10p034472' => 'qlo', 'QL11p032427' => 'qlo', 'RcHm_v2.0_Chr1g0331581' => 'rch', 'RcHm_v2.0_Chr3g0496541' => 'rch', 'RcHm_v2.0_Chr3g0496561' => 'rch', 'RcHm_v2.0_Chr5g0049611' => 'rch', 'RcHm_v2.0_Chr7g0177251' => 'rch', 'RcHm_v2.0_Chr7g0180641' => 'rch', 'Rhsim01G0121400' => 'rsi', 'Rhsim01G0197700' => 'rsi', 'Rhsim03G0053200' => 'rsi', 'Rhsim03G0053300' => 'rsi', 'Rhsim03G0053400' => 'rsi', 'Rhsim03G0053500' => 'rsi', 'Rhsim03G0053700' => 'rsi', 'Rhsim03G0053800' => 'rsi', 'Rhsim12G0159300' => 'rsi', 'Sabra04G0129700' => 'sbr', 'Sabra04G0129800' => 'sbr', 'Sabra08G0008400' => 'sbr', 'Sabra09G0120800' => 'sbr', 'Sabra09G0120900' => 'sbr', 'Sabra10G0191800' => 'sbr', 'Sabra10G0192000' => 'sbr', 'Sabra13G0049100' => 'sbr', 'Sabra13G0049200' => 'sbr', 'Sabra13G0049300' => 'sbr', 'Sabra13G0049400' => 'sbr', 'Sabra19G0049000' => 'sbr', 'SalBow4G2822' => 'sbo', 'SalBow5G4899' => 'sbo', 'SalBow6G4118' => 'sbo', 'SalBow7G3042' => 'sbo', 'SalBow8G2546' => 'sbo', 'Sc01g0005070' => 'sci', 'Sc04g0002460' => 'sci', 'Sc06g0002830' => 'sci', 'Sc21g0006600' => 'sci', 'Sc21g0006620' => 'sci', 'Sed0005381' => 'sed', 'Sed0007633' => 'sed', 'Sed0009454' => 'sed', 'Sed0019450' => 'sed', 'Sed0019713' => 'sed', 'Sed0020157' => 'sed', 'Sed0024983' => 'sed', 'SGA_v2.0_scaffold196G40977' => 'sas', 'SGA_v2.0_scaffold29G12123' => 'sas', 'SGA_v2.0_scaffold392G50662' => 'sas', 'SGA_v2.0_scaffold41G15791' => 'sas', 'Solyc01g009220.3' => 'sly', 'Solyc01g096960.3' => 'sly', 'Solyc01g096980.2' => 'sly', 'Solyc03g113170.3' => 'sly', 'Solyc03g113180.3' => 'sly', 'Solyc09g007140.4' => 'sly', 'Solyc10g076880.2' => 'sly', 'Solyc11g071560.2' => 'sly', 'Sopen01g004670' => 'spe', 'Sopen01g004680' => 'spe', 'Sopen01g004690' => 'spe', 'Sopen01g040670' => 'spe', 'Sopen01g040680' => 'spe', 'Sopen03g032230' => 'spe', 'Sopen03g032240' => 'spe', 'Sopen09g002010' => 'spe', 'Sopen10g028570' => 'spe', 'Sp4g09910' => 'spa', 'Sp6g23550' => 'spa', 'Sp6g37930' => 'spa', 'SpUn0001_0960' => 'spa', 'TAR374G1506' => 'tar', 'TAR458G0002' => 'tar', 'TAR622G0981' => 'tar', 'TAR623G1394' => 'tar', 'TAR633G0042' => 'tar', 'THA.LOC104800241' => 'tha', 'THA.LOC104800495' => 'tha', 'THA.LOC104805773' => 'tha', 'THA.LOC104810968' => 'tha', 'THA.LOC104816480' => 'tha', 'THA.LOC104826481' => 'tha', 'Thecc.02G162200' => 'tca', 'Thecc.03G079600' => 'tca', 'Thecc.03G079700' => 'tca', 'Thecc.03G079800' => 'tca', 'Thecc.05G246200' => 'tca', 'Thecc.05G246300' => 'tca', 'Thecc.05G246400' => 'tca', 'Thecc.09G265800' => 'tca', 'Thecc.09G265900' => 'tca', 'Thhalv10002090m.g' => 'esa', 'Thhalv10014066m.g' => 'esa', 'Thhalv10014544m.g' => 'esa', 'Thhalv10023940m.g' => 'esa', 'TPR.G11651' => 'tpr', 'TPR.G11722' => 'tpr', 'TPR.G11784' => 'tpr', 'TPR.G144' => 'tpr', 'TPR.G19878' => 'tpr', 'TPR.G22510' => 'tpr', 'TPR.G38378' => 'tpr', 'TPR.G8594' => 'tpr', 'TWI31G1146' => 'twi', 'TWI34G1202' => 'twi', 'TWI38G1417' => 'twi', 'TWI60G0863' => 'twi', 'TWI60G1130' => 'twi', 'TWI75G0903' => 'twi', 'TWI81G0343' => 'twi', 'unitig_0.g2304' => 'ugi', 'unitig_0.g307' => 'ugi', 'vmacro07553' => 'vma', 'vmacro16567' => 'vma', 'VMungo0647G0058' => 'vmu', 'VMungo0647G1281' => 'vmu', 'VMungo0720G2887' => 'vmu', 'VMungo1127G1694' => 'vmu', 'VMungo1127G2273' => 'vmu', 'VMungo1309G1551' => 'vmu', 'VMungo1309G2673' => 'vmu', 'VMungo1383G1344' => 'vmu', 'Zm00001eb032310' => 'zma', 'Zm00001eb047490' => 'zma', 'Zm00001eb052730' => 'zma', 'Zm00001eb218280' => 'zma', 'Zm00001eb218310' => 'zma', 'Zm00001eb222770' => 'zma', 'Zm00001eb222820' => 'zma', 'Zm00001eb297350' => 'zma' ) $gf_id = 'HOM05D000881' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000881' ) $data_identifier = 'HOM05D000881' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 16, 'bca' => (int) 18, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 2, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 13, 'eca' => (int) 2, 'bvu' => (int) 6, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 11, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297350' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1